Probably it has nothing to do with the ECU. Hard to describe the sympthoms. In short, the bike changes temper too much and too often, for no obvious reason. Unless it's because of fluctuating battery voltage.
I have a charging problem, I only have net charge above 3-4000 rpm so my voltage fluctuates between 12 and 14 V all the time. New regulator is ordered. I also seem to have problems with my LC-1, or rather the Bosch sensor. The dreaded error 8. Maybe time to buy a new sensor. So maybe all problems will go away as soon as these problems are fixed.
Anyway this made me think: there is no reason my battery voltage should affect how the engine runs as longs as it's over 12 volts. If this charging problem is the root cause of my 'issue', there is a possibility the InjDur table Cliff supplies have a little too much - or too little - variation. But that is just a theory and I'll try to investigate it further.
Baselining injectors is doable at home, but the fire fighters might not like it

For what it's worth, here is the table I used until Cliff "published" one. I got it from somewhere on the 'net, it's NOT confirmed correct at all for our injectors so I started using Cliff's instead:
# 16V 15V 14V 13V 12V 11V 10V 9V
InjVOn 600 700 700 800 900 1000 1100 1300
The difference from 12-14 volts, between this table and the other one, is not that much. It's in the order of 5% at cruising.